species:   Fugra
pid:       PID0933
parent:    FgmilR-7dps-31
paralog:   
locus:     NC_026474.1:11146370-11146483
matures:   ['UGAGGACAGUGACCAAGAAUGGC', 'AUAUCUUGGCCCCGCUGUCGGUUCUCGUG']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026474.1:11146370-11146483

3 out of bounds
13 alignments
10 proper strand
9 stranded perfect matches

                      *******************************                   *************************                 
UCUGGAUCUAGGCUGCACCCUGGAAUAUCUUGGCCCCGCUGUCGGUUCUCGUGGUGUGAUAUGUCAGAUGCCGAUGAGGACAGUGACCAAGAAUGGCCUGUGCAUGAGACGAGG
.((.(.(((....(((((...((....((((((...(((((((....((((((((((..........))))).)))))))))))).))))))....)).)))))..)))).)).
--------------------------------------------------------------------------UGAGGACAGUGACCAAGAAUGGC----------------- l=23 a=6 c
------------------------AUAUCUUGGCCCCGCUGUCGGUUCUCGUG------------------------------------------------------------- l=29 a=0 c*
--------------------------------------------------------------------------UGAGGACAGUGACCAAGAAUGGC----------------- l=23 a=6 ma
------------------------AUAUCUUGGCCCCGCUGUCGGUUCUCGUG------------------------------------------------------------- l=29 a=0 ma*

--------------------------------------------------------------------------UGAGGACAGUGACCAAGAAUGGC----------------- l=23 a=6 (c,ma)
--------------------------------------------------------------------------UGAGGACAGUGACCAAGAAUGGCCU--------------- l=25 a=3 
--------UAGGCUGCACCCUGGAAUAUCgUGG--------------------------------------------------------------------------------- l=25 a=1 

mb-01111
ax-1001011
ku-01
ss-101110101000
fn-101
